Wiki Documentation

In addition to the main sources of documentation, we have several pages which were originally contributed as wiki pages, on a few of the core functions of Biopython:

• The module for multiple sequence alignments, AlignIO
• History and replacement of Bio.Alphabet
• Managing local biological databases with the BioSQL module.
• Parsing GFF Files
• Interfacing with "Phylogenetic Analysis by Maximum Likelihood" (PAML) package.
• Phylo - Working with Phylogenetic Trees
• Population Genetics in Biopython
• Introduction to SearchIO
• Handling sequences with the Seq class.
• Introduction to SeqIO
• Introduction to the SeqRecord class.