Bio.FSSP.fssp_rec module¶

A superclass for reading [f]ixed-column type [f]lat-[f]ile records.

class Bio.FSSP.fssp_rec.fff_rec(inrec='')¶

Bases: object

Define superclass for reading fixed-column type flat-file records.

__init__(self, inrec='')¶: Initialize the class.

__repr__(self)¶: Return FSSP record object as a string.

__len__(self)¶: Return length (number of rows).

__getitem__(self, index)¶: Extract a subset of the record (treating it like an array).

class Bio.FSSP.fssp_rec.align¶

Bases: object

Definition of the align section in a FSSP file.

abs_res_num = (0, 4)¶

pdb_res_num = (4, 9)¶

chain_id = 10¶

res_name = 12¶

ss1 = 15¶

turn3 = 17¶

turn4 = 18¶

turn5 = (20, 22)¶

acc = (34, 37)¶

start_aa_list = 42¶